TurboMap: GPU Extension Alignment that Preserves Split Reads for Long-Read Mapping
Haotian Ma, Yewen Li, Guangming Tan, Yinlong Xie, and Xin Liu
HFSCIM: Hybrid FeFET-SRAM CIM Architecture for Continuous-Time Inference and Online Reinforcement Learning
Hegan Chen, Zihao Xuan, Yewen Li, Ning Lin, Jia Chen, Yan Zeng, Jichang Yang, Songqi Wang, Han Wang, Zhongrui Wang
TriOoO: An Extensible DSA Framework for Machine Learning Molecular Dynamics
Zihan Yan, Ning Kang, Guojun Yuan, Yewen Li, Yuanzhe Wang, Hao Zhang, Yachao Zhang, Guanglei Chen, Zejun Li, Dingwen Tao, Ninghui Sun, Guangming Tan
BAG: Faster Matrix Multiplication on a Single GPU
Yao Liu, Yewen Li, Zhonghai Zhang, Erlin Yao, Guangming Tan, Weile Jia
D2CIM: A 28nm 53.3 TFLOPS/W Decoding Digital CIM Macro for Efficient FlashMLA-based LLM Inference
Jia Chen, Zihao Xuan, Yewen Li, Zhuoya Yan, Zimu Li, Yat-Fong Yung, Yi Deng, Xiao Huo, Chi-Ying Tsui, Kwang-Ting Cheng, Fengbin Tu
Faster and Cheaper: Pushing the Sequence Alignment Throughput with Commercial CPUs
Zhonghai Zhang, Yewen Li, Ke Meng, Chunming Zhang, and Guangming Tan
iSCoder: Mitigating Genomic Sequencing Data Compression Bottlenecks via In-SRAM Computing
Wanqi Liu, Yewen Li, and Guangming Tan
FastDup: A Scalable Duplicate Marking Tool using Speculation-and-Test Mechanism
Zhonghai Zhang, Yewen Li, Ke Meng, Chunming Zhang, and Guangming Tan
FastBWA: Practical and Cost-Efficient Genome Sequence Alignment Pipeline
Zhonghai Zhang, Yewen Li, Ke Meng, Chunming Zhang, and Guangming Tan
FuHsi: Shifting Base-calling Closer to Sequencer via In-Cache Acceleration
Yewen Li, Guangming Tan, and Xueqi Li
NvWa: Enhancing Sequence Alignment Accelerator Throughput via Hardware Scheduling
Yewen Li, Xueqi Li, Ruihao Gao, Wanqi Liu, and Guangming Tan
Crescent: A GPU-based Targeted Nanopore Sequence Selector
Tong Li, Xueqi Li, Yewen Li, Ruibao Song, and Xun Wang
MetaZip: A High-Throughput and Efficient Accelerator for DEFLATE
Ruihao Gao, Xueqi Li, Yewen Li, Xun Wang, and Guangming Tan
FEB3D: An Efficient FPGA-Accelerated Compression Framework for Microscopy Images
Wanqi Liu, Yewen Li, Dawei Zang, and Guangming Tan
A Novel Image Tamper Detection and Self-Recovery Algorithm Based on Watermarking and Chaotic System
Yewen Li, Wei Song, Xiaobing Zhao, Juan Wang, and Lizhi Zhao
